vi
Preface
Preface
vii
viii
Preface
Preface
ix
xii
Contents
Contents
xiii
4
Heritage Microbiology an...
16 downloads
587 Views
74MB Size
Report
This content was uploaded by our users and we assume good faith they have the permission to share this book. If you own the copyright to this book and it is wrongfully on our website, we offer a simple DMCA procedure to remove your content from our site. Start by pressing the button below!
Report copyright / DMCA form
vi
Preface
Preface
vii
viii
Preface
Preface
ix
xii
Contents
Contents
xiii
4
Heritage Microbiology and Science
Introduction
5
6
Heritage Microbiology and Science
Introduction
7
8
Heritage Microbiology and Science
12
Heritage Microbiology and Science
Heritage Monuments and Materials
13
14
Heritage Microbiology and Science
Heritage Monuments and Materials
15
16
Heritage Microbiology and Science
Heritage Monuments and Materials
17
18
Heritage Microbiology and Science
Heritage Monuments and Materials
19
20
Heritage Microbiology and Science
Heritage Monuments and Materials
21
22
Heritage Microbiology and Science
Heritage Monuments and Materials
23
24
Heritage Microbiology and Science
Heritage Monuments and Materials
25
26
Heritage Microbiology and Science
28
Heritage Microbiology and Science
Heritage Monuments and Materials
29
30
Heritage Microbiology and Science
Heritage Monuments and Materials
31
32
Heritage Microbiology and Science
Heritage Monuments and Materials
33
34
Heritage Microbiology and Science
Heritage Monuments and Materials
35
36
Heritage Microbiology and Science
Heritage Monuments and Materials
37
38
Heritage Microbiology and Science
40
Heritage Microbiology and Science
Heritage Monuments and Materials
41
42
Heritage Microbiology and Science
Heritage Monuments and Materials
43
44
Heritage Microbiology and Science
46
Heritage Microbiology and Science
Heritage Monuments and Materials
47
48
Heritage Microbiology and Science
Heritage Monuments and Materials
49
50
Heritage Microbiology and Science
52
Heritage Microbiology and Science
Heritage Monuments and Materials
53
54
Heritage Microbiology and Science
Heritage Monuments and Materials
55
56
Heritage Microbiology and Science
Heritage Monuments and Materials
57
58
Heritage Microbiology and Science
Heritage Monuments and Materials
59
60
Heritage Microbiology and Science
Heritage Monuments and Materials
61
Heritage Monuments and Materials
63
64
Heritage Microbiology and Science
Heritage Monuments and Materials
65
66
Heritage Microbiology and Science
Heritage Monuments and Materials
67
68
Heritage Microbiology and Science
Heritage Monuments and Materials
69
70
Heritage Microbiology and Science
Heritage Monuments and Materials
71
72
Heritage Microbiology and Science
Heritage Monuments and Materials
73
74
Heritage Microbiology and Science
Heritage Monuments and Materials
75
Heritage Monuments and Materials
77
78
Heritage Microbiology and Science
Heritage Monuments and Materials
79
80
Heritage Microbiology and Science
Heritage Monuments and Materials
81
82
Heritage Microbiology and Science
Heritage Monuments and Materials
83
18,000
micrograms / ml
16,000 14,000 12,000 10,000 8,000 6,000 4,000 0
120
180
D. vulgaris
300 1350 1530 1740 2790 3015 3180 4230 4440 4620 5670
D. desulfuricans
minutes
84
Heritage Microbiology and Science
Heritage Monuments and Materials
85
86
Heritage Microbiology and Science
Heritage Monuments and Materials
87
88
Heritage Microbiology and Science
Heritage Monuments and Materials
89
90
Heritage Microbiology and Science
Heritage Monuments and Materials
91
92
Heritage Microbiology and Science
Heritage Monuments and Materials
93
98
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
99
100
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
101
102
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
103
104
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
105
106
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
107
Molecular Methods for Heritage Artefacts and Monuments
109
110
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
111
112
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
113
114
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
115
116
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
117
118
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
119
120
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
121
122
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
123
124
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
125
126
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
127
Molecular Methods for Heritage Artefacts and Monuments
129
130
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
131
132
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
133
134
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
135
136
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
137
138
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
139
140
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
141
142
Heritage Microbiology and Science
144
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
145
146
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
147
148
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
149
150
Heritage Microbiology and Science
152
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
153
154
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
155
Molecular Methods for Heritage Artefacts and Monuments
157
158
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
159
160
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
161
162
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
163
164
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
165
Molecular Methods for Heritage Artefacts and Monuments
167
168
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
169
170
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
171
172
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
173
174
Heritage Microbiology and Science
Molecular Methods for Heritage Artefacts and Monuments
175
180
Heritage Microbiology and Science
Historic Ships and their Preservation
181
182
Heritage Microbiology and Science
Historic Ships and their Preservation
183
184
Heritage Microbiology and Science
Historic Ships and their Preservation
185
186
Heritage Microbiology and Science
Historic Ships and their Preservation
187
188
Heritage Microbiology and Science
Historic Ships and their Preservation
189
190
Heritage Microbiology and Science
Historic Ships and their Preservation
191
192
Heritage Microbiology and Science
Historic Ships and their Preservation
193
194
Heritage Microbiology and Science
Historic Ships and their Preservation
195
196
Heritage Microbiology and Science
Historic Ships and their Preservation
197
198
Heritage Microbiology and Science
Historic Ships and their Preservation
199
200
Heritage Microbiology and Science
Historic Ships and their Preservation
201
202
Heritage Microbiology and Science
Historic Ships and their Preservation
203
Historic Ships and their Preservation
205
206
Heritage Microbiology and Science
Historic Ships and their Preservation
207
208
Heritage Microbiology and Science
Historic Ships and their Preservation
209
210
Heritage Microbiology and Science
Historic Ships and their Preservation
211
212
Heritage Microbiology and Science
Historic Ships and their Preservation
213
214
Heritage Microbiology and Science
Historic Ships and their Preservation
215
216
Heritage Microbiology and Science
Historic Ships and their Preservation
217
218
Heritage Microbiology and Science
220
Heritage Microbiology and Science
Historic Ships and their Preservation
221
222
Heritage Microbiology and Science
Historic Ships and their Preservation
223
224
Heritage Microbiology and Science
Historic Ships and their Preservation
225
226
Heritage Microbiology and Science
Historic Ships and their Preservation
227
228
Heritage Microbiology and Science
Historic Ships and their Preservation
229
230
Heritage Microbiology and Science
Historic Ships and their Preservation
231
232
Heritage Microbiology and Science
Historic Ships and their Preservation
233
234
Heritage Microbiology and Science
Historic Ships and their Preservation
235
Historic Ships and their Preservation
237
238
Heritage Microbiology and Science
Historic Ships and their Preservation
239
240
Heritage Microbiology and Science
Historic Ships and their Preservation
241
242
Heritage Microbiology and Science
Historic Ships and their Preservation
243
244
Heritage Microbiology and Science
246
Heritage Microbiology and Science
Historic Ships and their Preservation
247
248
Heritage Microbiology and Science
Historic Ships and their Preservation
249
250
Heritage Microbiology and Science
Historic Ships and their Preservation
251
252
Heritage Microbiology and Science
Historic Ships and their Preservation
253
254
Heritage Microbiology and Science
Historic Ships and their Preservation
255
256
Heritage Microbiology and Science
258
Heritage Microbiology and Science
Historic Ships and their Preservation
259
260
Heritage Microbiology and Science
Historic Ships and their Preservation
261
262
Heritage Microbiology and Science
Historic Ships and their Preservation
263
264
Heritage Microbiology and Science
Historic Ships and their Preservation
265
266
Heritage Microbiology and Science
Historic Ships and their Preservation
267
268
Heritage Microbiology and Science
Historic Ships and their Preservation
269
270
Heritage Microbiology and Science
Historic Ships and their Preservation
271
272
Heritage Microbiology and Science
Historic Ships and their Preservation
273
274
Heritage Microbiology and Science
Historic Ships and their Preservation
275
276
Heritage Microbiology and Science
Historic Ships and their Preservation
277
278
Heritage Microbiology and Science
280
Heritage Microbiology and Science
Historic Ships and their Preservation
281
282
Heritage Microbiology and Science
Historic Ships and their Preservation
283
284
Heritage Microbiology and Science
Historic Ships and their Preservation
285
286
Heritage Microbiology and Science
Historic Ships and their Preservation
287
288
Heritage Microbiology and Science
Historic Ships and their Preservation
289
294
Heritage Microbiology and Science
Endnote
295
296
Heritage Microbiology and Science
Endnote
297
298
Heritage Microbiology and Science
Endnote
299
SUBJECT INDEX
Acidithiobacillus ferrooxidans 118, 209, 213 Acidity 184, 204, 238, 242, 243, 252 Acidobacteria 148, 166, 167, 169, 170, 173 Acidobacterial sequences 167, 169, 170 Acidobacterium 169, 171, 172 Acids 15, 76, 126, 205, 209, 217, 246, 248, 250, 252, 254, 255, 257 humic 101, 112, 115, 116 sulfuric 76, 77 Actinobacteria 48, 161, 162, 164, 167, 213 Algae 12, 13, 19, 20, 39, 41, 42, 51, 53, 143, 144 Altamira Cave 103, 104, 166, 167, 169–173 Alterations 11, 12, 14–16, 30–32, 51, 63, 76, 77, 80, 86, 87 Amplifications 101, 102, 118, 151, 158, 168 Angkor Wat 19–21, 26, 31, 32, 34 Anodes 258, 260, 261, 263, 269, 273, 276 Archaeological sites 15, 24, 25, 155, 158, 160, 180, 190, 198, 199, 201, 202 of Milet 22 wood 115, 151, 154, 155, 185, 240 waterlogged 109, 141, 151, 153, 201 Archaeology 3, 15, 129, 140, 179, 200, 202, 279, 289, 293 Arsenic 130, 132 Arthrobacter 48, 49, 59, 157 Autofluorescence 120, 121, 124, 147
Beetles, death watch 228, 229 BIOBRUSH (EU Project) 76, 78, 79, 92 Biocidal treatments 11, 17, 19, 20, 24 Biocides 14, 17, 51, 52, 56, 57, 168, 269, 271, 273, 276, 277 commercial 52, 57, 59 BIODAM (EU Project) 56, 60 Biodegradation 25, 43, 92, 93, 155, 201 Biodeterioration 11, 13–16, 18, 26, 39, 44, 60, 61, 65, 74, 79, 97–99, 104, 105, 143–145, 155, 165, 166 processes 12–16, 19, 24, 79, 104, 105 Biofilms 11, 12, 14, 39, 40, 51, 59, 60, 120, 147, 158, 159, 162, 163, 165, 209, 278, 294 epilithic biofilms 162–164 Biofouling 12, 44, 78, 79, 92, 165 Biomass 40, 41, 43, 163, 164 Biomineralization 62, 73, 74 BIOREINFORCE (EU Project) 65, 73 Bioremediation 4, 62, 65, 76, 78, 80, 83, 84, 86, 87 BisBAL 52, 55–57, 59, 60 Blastobacter 152 Blocking agent 116, 120, 121, 124, 125 Burgzand Noord (BZN) 182, 187–189, 201, 202 Burial 15, 181, 200, 204 environment 192, 198 site 212
Bacillus 48, 49, 216 BACPOLES (EU Project) Final report 201, 202 Bacteria biocalcifying 78, 80, 81, 84 iron-oxidising 118, 121, 205, 209, 213 iron-reducing 121, 169, 208 nitrate-reducing 80, 84 sulfate-reducing 18, 23, 80, 182, 212, 213 wood-degrading 151 wood-inhabiting 152, 155 Bacterial cell fractions 65, 68, 73 Bacteroidetes 161, 162, 167, 212 Baltic Sea 181, 189, 200 Barrier, anti-graffiti 52–54 Beams electron 129 stored 129, 211, 213
Calcium 37, 68, 135, 168, 245, 246, 249, 250, 252 carbonate 62, 63, 134 sulfate (see also gypsum) 134, 135, 245 Calceine 68, 70, 71 Calcite 63, 65, 70–73, 78, 82 Cambodia 12, 18, 19, 31 Canvas 203, 236, 237, 239, 242 Carbogel 84, 85, 87–91 Carrier 84, 87, 89, 91, 115, 116 Cathode 258, 260, 270, 273 Caves 4, 103, 167, 170, 173, 294 cDNA (complementary or copy DNA) 118, 211 Cellulose 115, 135, 136, 151, 152, 154, 238, 239, 241, 246 Chimeras 102, 159 Chlorella 42, 43
Subject Index Chloride 18, 252, 258–260, 265, 266, 273, 281 ions 258–261, 265, 266, 273, 276, 277 electrolytic removal of 261, 276, 277 sodium 261, 266, 273, 276, 277 Chlorophyll 40, 56 Chroma values 55 Classification 30, 32–34, 166 scheme 29, 31, 32 systems 29, 30 unsupervised 30, 32, 33, 35 user-defined 34, 37 Clay 190, 191 Clone(s) 100, 102, 118, 152–154, 162, 168, 211 libraries 116, 117 Cloth 196, 237, 238 Colonisation 13, 39, 41, 45, 51, 53, 91, 104, 192 Colour 29, 30, 55–57, 59, 63, 70, 132, 296 Conservation 5–7, 19, 24–26, 31, 37, 60–63, 65, 74, 92, 93, 125, 126, 173, 174, 242–244, 259, 260, 276–278, 293, 294 fluid 209, 211 plan 280, 289 practice 16, 24, 25, 30, 78, 79 procedures 17, 266 products 52, 54, 59, 63 strategies 11, 12, 98 treatments 12, 16, 17, 22, 24, 30, 31, 52, 53, 77, 80, 198, 242 work 22, 228, 276 Consolidation 17, 65 Contamination 12, 13, 15, 20, 21, 132 Corrosion 18, 76, 139, 140, 246, 258, 259, 261, 266, 273, 277, 279–284, 286–289 control 279, 280, 282, 283, 288 processes 15, 246, 258, 279, 280, 283 products 137, 140, 258–260, 273, 280, 281, 283, 286–288 Crusts 11, 22, 23, 45, 46, 48, 78, 80, 85, 90, 134, 135, 258 black 29, 76, 77, 135 Crystals, crystalline structures 62, 63, 77, 86, 91 Cultural artefacts 11–13, 16, 24, 109, 157, 164 assets 97, 98, 105, 166 heritage 14, 25, 62, 74, 75, 79, 97, 98, 101, 103, 105, 106, 126, 127, 129, 149, 166, 174, 175, 179, 180 sites 117, 181, 199, 200 Culture collections 80, 81, 84, 90 Cutty Sark 213, 265–267, 269, 277 Cyanobacteria 12, 17, 19, 20, 23, 39–42, 51, 143, 144, 149, 156, 161–164, 167, 173 Damage 23, 30, 31, 79, 91, 110, 136, 222, 223, 227, 228, 237–239, 246, 266, 276 microbially-influenced material 24
301 Darsser Cog 189, 202 Decay 30, 37, 109, 194, 221, 222, 226–228, 232 Deck 231, 266 lower gun 231, 233 Degradation 25, 27, 37, 121, 151, 155, 181, 182, 185, 195, 258, 259, 266, 275–277 bacterial 109, 110, 181 Dehydration 145, 283, 284 Delivery systems 79, 84, 87, 89, 90 Density 57, 185–187, 190, 196, 202, 261 current 261, 273, 276, 277 Desiccation 280, 282 Desulfobacterium 213 DGGE (denaturing gradient gel electrophoresis) 100, 104, 116, 117, 156 Diffraction patterns 133–135 Dissolved oxygen 181, 195, 198, 199, 260 Diversity 102, 108, 116, 120, 151, 163, 166, 167, 169, 170, 173, 213, 217, 293, 294 acidobacterial 167, 170, 173 bacterial 108, 115, 151, 155, 170 microbial 99, 108, 118, 151, 154 DNA (deoxyribonucleic acid) 5, 97, 99–105, 108, 110–112, 114–119, 153, 158, 167, 168, 210, 298 environmental 116, 118, 157 fragments 99, 101, 102, 105, 166, 169 microarrays 105 Douglas fir 226, 227, 229–231, 234 Dry dock 234, 262, 265, 266, 280 EDDHMA 247–249, 254, 255 EDTA (ethylenediaminetetraacetic acid) 113, 122, 145, 246, 247 Efficacy 23, 24, 56, 59, 84, 192, 198 Efficiency 64, 70–73, 115, 261, 269 Electrolysis 257, 259–261, 264–266, 269, 272, 273, 275–277 Electrolyte 258, 259, 261, 266, 269, 273, 279–281 Electrolytic treatment 259–261, 263, 265, 266, 273, 276, 277 Environmental conditions 12, 15, 17, 23, 24, 63, 87, 103, 108, 109, 156, 159, 163, 194, 258 signals 120, 217 site analysis 11 Environments controlled 238, 242, 281 hypogean 148, 149 oxic 208, 209 EPS (extracellular polysaccharide or extracellular polymeric substances) 13, 51, 52 ERDAS Imagine© (image analysis software) 33–36 Erosion 109, 133, 181, 182, 184, 187, 189, 191, 194 bacteria 116, 117
302 Excavation 3, 5, 7, 11, 15–17, 152, 180, 182, 187, 189, 190, 194, 198 site 17, 18 Extraction 64, 110–113, 249, 250, 252–255 Fabric 27, 237, 238, 241, 242 FeOOH 281–283, 285–288 Ferrous chloride 281–284, 287, 288 hydrate, stable 283, 286 Fibres 135, 136, 237, 238, 242 Field trials 52, 59, 60, 81, 84, 86, 87, 89, 91, 195 Fingerprinting techniques 100 FISH (fluorescent in-situ hydridisation) 104, 108, 120–125, 143–145, 156 technique 120, 144, 147, 149 Flagship 3, 7, 219, 223, 236 Fluorochromes 143 Formamide 100, 122, 123, 145 Foundation piles 201, 202 Framework, common spatial 29, 32, 37 Fungi 17, 19, 21, 39, 40, 44–46, 52, 59, 103, 118, 143, 144, 156, 157, 181, 185, 192, 296 Gamma-Proteobacteria 212, 213 Geobacter 154 GIS 27–34, 36, 37 Glass 11, 15, 45, 46, 48, 49, 120, 198, 294 stained 46, 48 surfaces 45 Gloeocapsa 42 Gotland sandstone 80, 91 GRADOC 31, 38 Growth media 81, 86 Gypsum 77, 85, 134, 135, 205, 245 Heritage 3, 7, 31, 38, 50, 79, 106, 149, 200, 202, 293 materials 4, 5, 7, 60, 79, 125, 130, 278, 294, 295, 299 Historic monuments 40, 42, 156, 157 sites 12, 18, 24, 280 HMS Victory 219, 220, 222–225, 229–235, 243, 293 Trafalgar sail 236–238, 242, 243 Hull 3–5, 118, 186, 189, 194, 204, 211–213, 216, 219–223, 225, 226, 229, 245, 246, 261, 266, 280, 281 planking 226, 227, 229 timbers 204, 205, 209 Humidity 14–17, 55, 77, 259, 281, 284, 287, 288 Hybridisation buffers 122, 123 Hydrocerussite 137, 138
Subject Index Image analysis 32, 71, 73, 147 Iron 12, 84, 118, 130, 132, 133, 182, 198, 213, 245–252, 254, 255, 257, 258, 269–271, 279, 281–284, 286–289 Age 130, 151, 152 archaeological 130, 282 chloride-infested 281 composites 258 compounds 245, 246, 250, 251, 254, 255, 276 extraction of 245, 250, 253, 256 concentrations of 245, 246, 249 content, estimated total 251, 252 conversion of 286–288 corrosion of 140, 181, 279–285 cycles 205, 208 frames 266 hull 280, 281 oxidation of 139, 208, 284, 287 oxide 207, 259, 286 powder 281, 283, 285, 287, 288 ship 289 sulfides 118, 182, 204, 245, 246, 253 wood/ 273 tubercules, build-up of 269, 271 -reducing bacteria 121, 266 Ironwork 266, 267 Isoamyl alcohol 111 James Matthews 181, 194, 195, 197, 200–202 Japanese paper 84, 90 Keel 219, 220, 222, 233, 266 Knees 222, 228–231 Leucobacter 48, 49 Libraries 12, 118, 212, 213 Lichens 12, 19, 20, 45, 51, 156 Ligand 247, 251, 254 Lignin 151, 154, 182, 204, 239, 252, 254, 255 Limestone 42, 60, 64, 65, 80–82, 86, 164 Linen 238, 239, 241, 242 aged 239, 240 fibres 237, 239 sailcloth 240–243 Locharbriggs stone 57–59 Malachite 137–139 Maps 27, 28, 30, 132, 151, 182, 269 Marble 23, 24, 39, 60, 65, 87, 88, 91, 135, 144 surface 23, 24 Marine environments 37, 181, 185, 198, 199, 213, 217, 260, 277 sediments 62, 172, 181, 204, 206, 212, 213 Mary Rose 3–7, 114, 118, 139, 182, 204, 205, 209, 211–213, 216, 238, 243, 277, 293
Subject Index Matera Cathedral 80, 81, 86, 89 Materials archaeological 5, 198, 199 bolting 258, 266–268 composite 62, 130 inorganic 62, 269, 276, 277 Mats 192, 194, 196, 278 microbial 23 Mayan buildings 40 Mesh, synthetic 194 Metals 11, 17, 18, 26, 133, 136, 181, 182, 197, 198, 203, 204, 229, 249, 258–260, 269, 273, 276, 277, 294 Methylobacterium 216 Microbial biofilms 12, 13, 19, 20, 24 communities 20, 25, 45, 97–100, 103, 105, 116, 143, 147, 149, 156, 157, 173, 269, 294, 295 community analysis 157 consortia 12–14 contamination 13, 14, 16, 17, 80, 273 populations 143, 145, 210 Microbially Influenced Corrosion 50, 165 Microbiological methods culture-independent 99, 156 traditional 91, 92, 156 Microelectrodes 198, 199 Microorganisms 11–16, 23, 39, 40, 45, 78–80, 86, 97–100, 102–106, 143, 144, 147, 148, 155–158, 166, 169, 170, 269, 294–296 detection of 98, 99, 104, 105, 166 heterotrophic 59 metabolism of 99 molecular surveys of 102, 103 water-borne 15 Milan Cathedral 86–88 Milet 22, 24 Molecular techniques 97, 99, 108, 112, 143, 205 amplification 168, 169 primers 113, 116, 157, 168, 169, 212 probes 120, 121, 123, 124, 132, 138, 143–145, 147, 148, 239 Monitoring 17, 19, 22, 27, 89, 104, 105, 182, 186, 187, 189, 198, 199, 201 programme 196, 197 wooden shipwrecks 201 Monuments 16, 22, 60, 73, 78, 80, 86, 97, 101, 102, 105, 156, 158, 162–164, 295 Mortar 4, 6, 22, 51, 74, 84, 85, 89, 91, 113 Mural paintings conservation 38 Museums 5, 6, 16, 200, 201, 203, 233, 234, 259, 299 NIR (Near Infrared) 240, 242 Nets 187–191, 194, 202 polypropylene 189–191
303 Nickel 130, 132, 165 Nitrates 13, 76–78, 80, 86, 87, 89, 92, 207, 252 Nostoc 42, 43 NRB, (nitrate-reducing bacteria) 80, 83, 84, 87, 89, 91 Nucleic acids 99, 110, 112, 115, 116, 147, 159 Nucleotides 119, 166, 168, 170, 214, 215 Nydam 17, 18, 151, 152 Oak 108, 110, 114, 117, 124, 192, 198, 220, 221, 226–231, 234 Obernkirchen stones 57–59 Organic materials 11, 144, 181, 182, 190, 192, 195, 198, 239, 273 Oxygen 11, 13, 15, 17, 98, 181, 184, 196, 199, 205–207, 213, 246, 258, 260, 261, 279 Paintings 15, 76, 103, 167, 169, 173, 296 PCR (Polymerase Chain Reaction) 99, 101, 108, 114–119, 151, 166 amplifications 97, 101, 102, 153 inhibitors 101, 115 standard 101, 102 PEG (polyethylene glycol) 111, 114, 115, 209, 246, 250, 252, 253, 255 pH 11, 14, 51, 83, 84, 121, 122, 124, 145, 184–186, 194, 195, 198, 199, 209, 210, 247–250, 252, 261, 276, 277 Photosynthetic algae 23 Phylogenetic analyses 99, 118, 153, 159, 168–170, 173, 211 Pine, pitch 226, 227, 230, 231, 234 Planktosphaeria 42 Pleurococcus 42 PLFA (phospholipid fatty acid) 40, 157, 164 profiles 159, 163 Polders 187, 202 Polyethylene 90 glycol (see also PEG) 114, 115, 209, 246, 255 Polysaccharides 112, 115 Pores 65, 71, 72, 156, 239 Porosity 11, 13, 24, 56, 63, 65, 68, 70, 80, 87, 91 Precipitation 62, 63, 115, 245 Preservation 5, 7, 15–17, 24, 77, 137, 166, 167, 195, 233, 237, 242, 266 state of 185, 186, 194, 217 Preventol A8 56–60 Primers (see molecular) Probes (see molecular) Proteobacteria 118, 153 Pyrite 118, 205–207, 209 rDNA (DNA coding for rRNA) 46, 47, 108, 153, 168, 169 Reburial 182, 185–187, 198, 199, 202, 203 projects 185, 195, 199–201 trenches 198, 199
304 Red alizarine 70, 71 Redox 11, 184, 186, 194, 195, 198, 199 Relative humidity 31, 55, 163, 240, 241, 280–289 low 280, 283, 287 programme 288 Restoration 19, 24, 25, 45, 46, 79, 219, 225, 226, 231, 235 RNA (ribonucleic acid) 97, 103, 104, 108, 110, 112, 114–119, 210, 211 clean-up 113 extraction of 113, 114 sample 113, 114, 119 digested 114 rRNA 108, 118, 148, 166, 167, 169, 216 gene sequences 99, 169, 170 genes 99, 143, 151, 166, 168–170, 173 Rubrobacter 162 Sail 236–239, 242, 243 Sailcloth 236, 237 Salinibacter 162, 164 Salts 15, 37, 78–80, 91, 115, 164, 205, 245, 255, 261, 281 Sand 5, 25, 165, 185, 187, 190, 195 Sandbags 186, 187, 189–191, 195, 196 Sandstone 18, 39, 42, 52, 56, 59, 60 Sandy soil 171, 172 Scaffolding nets 189, 191, 194, 202 Scour 181, 182, 192, 196 Scytonema 40, 42, 43 Seabed response 195–197 Seawater 181, 205, 281 Sediment 18, 74, 110, 112, 181, 182, 184, 186, 187, 189–192, 194–196, 198, 199, 206, 211–213, 216, 217 Sequencing 100, 105, 118, 153, 155, 158, 168 Shade cloth 196, 197 mat 196, 197 Ship 6, 139, 179, 182, 187, 189, 190, 204, 205, 222, 225–227, 233, 261, 262, 265, 266, 269, 276, 277, 280, 281 screw-driven 280 timbers 114, 115, 118, 216 wooden 222 Shipwreck sites 179, 181, 182, 195, 199 registered historic 180 SRB 80, 84, 87, 90, 91, 266 ss Great Britain Trust 280, 288, 289 SSCP (single strand conformation polymorphism) profiles 158, 159, 161 Stone(s) 19, 20, 26, 39, 52–54, 56, 57, 59, 63, 65, 70, 76–80, 84–87, 89–91, 134, 156, 165 conservation of 25, 26, 37, 74, 92, 93 materials 64, 65, 70, 73, 80, 83, 86 monumental 64, 71, 73
Subject Index natural 13, 18, 19, 63, 80 porosity 64, 71, 72 protectives, microbially-resistant 22 surfaces 20, 54, 59, 60, 63, 68, 70, 73, 79, 81, 84 Sulfate 18, 76, 78, 80, 83, 86, 87, 90, 91, 181, 182, 205, 206, 209, 210, 245, 252, 253 Sulfides 182, 198, 199, 206, 209, 210, 245 Sulfur 5, 110, 126, 139, 204–206, 209, 213, 217, 249, 252, 253, 255 compounds 204, 245, 253, 255 reduced 204 cycle 205–207 reduced forms of 245, 253 Sulfuric acid 182, 204, 209, 245, 246 Surfaces 20, 23, 29, 30, 39, 41, 51–54, 56, 134–138, 147, 148, 158, 209, 210, 238, 239, 245, 246, 252–255, 259 external 39, 72, 160, 162, 164 heritage 51, 52, 59, 60 inner 13, 139, 159, 163 metal 258, 277 test 56, 59 unpainted 41, 43 Synchrotron radiation 128–130, 140, 141, 276 sources 128–130, 139 Synechococcus 42, 43 Synechocystis 42, 43 Teak 226–232, 234, 266 Temples 18, 22, 158 Teredo 181, 185, 200 Terracotta warriors 16, 17 Terram 190, 192, 194, 195 Textiles 11, 16, 18, 135, 198, 239, 242, 243, 294 Thiobacillus 118, 213, 216, 217 Thiosulfate pathways 208–210 Timbers 5, 118, 181, 187, 194, 195, 204, 205, 213, 216, 217, 219, 220, 222, 228, 231–234, 266, 268, 269, 276 buried softwood 109 exposed 5, 192, 194, 195 rotten 228 Trentepohlia 42 T-RFLP (terminal restriction fragment length polymorphism) 116, 151 Tricyclazole 55–57, 59 Underwater heritage sites 179 maritime heritage sites 180 sites 187, 200 post-excavation 186 UV (ultraviolet) light 70, 71, 119 Uxmal 40, 41, 158, 160
Subject Index Vasa 114, 118, 120, 121, 124, 126, 139, 182, 204, 209, 217, 245, 249, 252, 255, 256 wood 245, 246, 254, 255 Victory (see HMS Victory) Wadden Sea 181, 182, 184, 187, 189–191, 201 Wall 30, 32, 39, 41, 159, 296 wood cell 185, 204 Water 11, 13–15, 23, 39, 56, 64, 68, 76, 77, 208, 209, 239–241, 245, 246, 252–254, 266, 279–281, 285, 286 absorption 54, 70, 72, 91 capillary absorption 53, 54, 59 column 181, 184, 187, 194, 196 content 239 level 22, 23, 269 porosity 65, 68 uptake 70, 91 Water-repellent 52–54, 63 Weathering 27, 30, 54, 55, 92, 135, 140 forms 27, 30–33 William Salthouse 192, 193 Wood 11, 17, 18, 108–117, 121, 125, 154, 155, 181, 186, 197, 198, 204, 205, 217, 218, 245, 246, 249–256, 269, 270, 276, 277 core samples of 266, 273 deterioration 121, 125 matrix 246, 251, 254
305 preventing bacterial decay of 201, 202 samples 111–115, 245, 249, 254 dried 111 environmental 111, 113 eroded 120 mashed oak 121, 124 pine 181 in situ 185 surfaces 245, 249, 253 waterlogged 108, 109, 110, 120, 185, 254, 255 archaeological 151, 154 density of 185 pine 245 Wooden poles 190 shipwrecks 181 warships 222, 224, 233 Wreck 179, 182, 187, 189, 192, 194, 196–198, 200–202, 212 site 4, 5, 185, 186, 189, 194, 197, 246 Wrought iron 266, 268, 269, 271, 273, 274, 276, 277, 288 X-rays 128, 138–140 XRD (X-ray diffraction) 133, 135, 281, 283 Yarns 237, 238, 242 Yucatan 158, 160, 165
